Paper

Paper

Paper pages are numbered public reading notes. They are selective notes for papers worth returning to, not a complete copy of the formal reading workspace.

Registry

The registry lists public paper notes. Each note links to the reading page and the original PDF.

#	Title	Type	Journal	Year	PDF
1	Single-cell biology: what does the future hold?	Editorial	Molecular Systems Biology	2023	PDF
2	Endotypes of Atopic Dermatitis	Review	The Journal of Allergy and Clinical Immunology	2025	PDF
3	Cell Death in Cancer	Review	Cell	2026	PDF
4	Automated Methods for Cell Type Annotation on scRNA-seq Data	Review	Computational and Structural Biotechnology Journal	2021	PDF
5	Mapping the Immune Cell Landscape of Severe Atopic Dermatitis by Single-Cell RNA-seq	Article	Allergy	2024	PDF
6	Single-Cell Transcriptome Analysis of Human Skin Identifies Novel Fibroblast Subpopulation and Enrichment of Immune Subsets in Atopic Dermatitis	Article	The Journal of Allergy and Clinical Immunology	2020	PDF
7	Best Practices for Single-Cell Analysis across Modalities	Review	Nature Reviews Genetics	2023	PDF
8	Spatial Transcriptomics Combined with Single-Cell RNA-sequencing Unravels the Complex Inflammatory Cell Network in Atopic Dermatitis	Article	Allergy	2023	PDF
9	Multimodal Clocks of Human Aging	Article	Cell	2026	PDF
10	Toward Trustworthy Artificial Intelligence in Multi-Omics: A Review of Reproducibility Stability and Interpretability	Review	Briefings in Bioinformatics	2026	PDF
11	Semi-Supervised Disentangled Representation Learning for Single-Cell RNA Sequencing Data	Article	Briefings in Bioinformatics	2026	PDF
12	Systemic Inflammatory Biomarkers as Risk Factors for Age-Related Ocular Diseases: A Large-Scale Prospective Cohort Study	Article	British Journal of Ophthalmology	2026	PDF
13	Optimizing Colorectal Cancer Screening through Polygenic Risk Score-Based Risk Stratification: Evidence from a Population-Based Cohort and Screening Trial	Article	Genome Medicine	2026	PDF
14	Harnessing the Power of Biomarkers for Diffuse Intrinsic Pontine Gliomas	Article	Nature Medicine	2026	PDF
15	Genetic Association and Machine Learning Improve the Prediction of Type 1 Diabetes Risk	Article	Nature Genetics	2026	PDF
16	Recommendations for Robust and Reproducible Research on Ferroptosis	Review	Nature Reviews Molecular Cell Biology	2025	PDF
17	Advancing AI for Multi-Omics and Clinical Data Integration in Basic and Translational Cancer Research	Review	Nature Reviews Cancer	2026	PDF
18	Interpretation Extrapolation and Perturbation of Single Cells	Review	Nature Reviews Genetics	2026	PDF
19	Advances and Applications in Single-Cell and Spatial Genomics	Review	Science China Life Sciences	2024	PDF
20	Single-Cell RNA-seq Highlights Intratumoral Heterogeneity in Primary Glioblastoma	Article	Science	2014	PDF
21	Dissecting the Multicellular Ecosystem of Metastatic Melanoma by Single-Cell RNA-seq	Article	Science	2016	PDF
22	Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer	Article	Cell	2017	PDF
23	A Pan-Cancer Single-Cell Transcriptional Atlas of Tumor Infiltrating Myeloid Cells	Article	Cell	2021	PDF
24	A Multimodal Ocular Aging Index Reveals Proteomic Pathways and Predicts Incident Age-Related Eye Diseases	Article	npj Aging	2026	PDF
25	Epithelial-to-Mesenchymal Transition as a Central Driver of Tumor Cell Plasticity	Review	Nature Cancer	2026	PDF
26	Genetic Analysis of Circulating Metabolic Traits in 619,372 Individuals	Article	Nature	2026	PDF
27	AutoScientists: Self-Organizing Agent Teams for Long-Running Scientific Experimentation	Article	arXiv	2026	PDF

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