Method

Method

This page collects methods and analytical frameworks that appear repeatedly while reading papers. Each method page starts as a short note and can later be expanded into a deeper walkthrough.

Index

Index	Method	Type	Why It Matters	Status
001	Multiplexed Protein Imaging	Spatial profiling	Measures predefined protein markers in tissue while preserving location	Stub
002	EcoTyper	Cell-state/ecotype discovery	Defines cell states and tumour ecotypes from single-cell and bulk transcriptomics	Stub
003	Spatial Domain Discovery	Spatial analysis	Finds tissue niches, domains, or neighbourhoods from spatial omics data	Stub
004	Spatial Transcriptomics	Spatial omics	Measures gene expression with tissue location information	Stub
005	Spatial EcoTyper	Spatial ecotype framework	Integrates spatial cell-state information across samples to define SEs	Stub

Use

Create or expand a method page when a paper depends on a tool, assay, model, or analytical framework enough that understanding the method changes how the biological claim should be read.