Reads a .gmt gene set file and returns a named list,
where each list element is a gene set.
Usage
gmt2list(file, verbose = TRUE)
Arguments
- file
Character. Path to a .gmt file.
- verbose
Logical. Whether to print message. Default is TRUE.
Value
A named list where each element is a character vector of gene symbols.
Examples
if (FALSE) { # \dontrun{
# Requires a GMT file to run:
gmt_file <- "path/to/geneset.gmt"
gene_sets <- gmt2list(gmt_file)
length(gene_sets)
names(gene_sets)[1:3]
} # }
