Skip to contents

Reads a .gmt gene set file and returns a named list, where each list element is a gene set.

Usage

gmt2list(file, verbose = TRUE)

Arguments

file

Path to a .gmt file.

verbose

Logical. Whether to print message. Default = TRUE.

Value

A named list where each element is a character vector of gene symbols.

Examples

# gmt_file <- system.file("extdata", "h.all.v2024.1.Hs.symbols.gmt", package = "evanverse")
# gene_sets <- gmt2list(gmt_file)