gmt2df: Convert GMT File to Long-format Data Frame — gmt2df • evanverse

Reads a .gmt gene set file and returns a long-format data frame with one row per gene, including the gene set name and optional description.

Usage

gmt2df(file, verbose = TRUE)

Arguments

file: Character. Path to a .gmt file (supports .gmt or .gmt.gz).
verbose: Logical. Whether to show progress message. Default is TRUE.

Value

A tibble with columns: term, description, and gene.

Examples

if (FALSE) { # \dontrun{
# Requires a GMT file to run:
gmt_file <- "path/to/geneset.gmt"
result <- gmt2df(gmt_file)
head(result, 10)
} # }