Record a derived phenotype audit summary

Summarises phenotype columns created by the derive_* family using ukbflow's standard name prefix convention. The function records whichever columns are present and marks missing components as not present.

Usage

audit_pheno(audit, data, name)

Arguments

audit

A ukbflow_audit object created by audit_start.

data

A data.frame or data.table containing derived phenotype columns.

name

(character) Phenotype prefix used by derive_*, e.g. "lung" for lung_status, lung_icd10, and lung_timing.

Value

The updated ukbflow_audit object.

Examples

aud <- audit_start("example_analysis")
dt <- data.frame(
  eid = 1:3,
  lung_status = c(TRUE, FALSE, TRUE),
  lung_date = as.Date(c("2020-01-01", NA, "2021-01-01"))
)
aud <- audit_pheno(aud, dt, "lung")