Record a DNAnexus job in an audit manifest

Records a DNAnexus job ID and, when available, lightweight metadata from dx describe job-XXXX --json. The function is best-effort: if the job cannot be described in the current environment, the job ID is still recorded and metadata fields are set to NA. Cost is not estimated.

Usage

audit_job(audit, job_id, label = NULL)

Arguments

audit

A ukbflow_audit object created by audit_start.

job_id

(character) DNAnexus job ID, e.g. "job-XXXX".

label

(character or NULL) Optional label for this job record. Default: NULL, which creates "job_N".

Value

The updated ukbflow_audit object.

Examples

aud <- audit_start("example_analysis")
if (FALSE) { # \dontrun{
job_id <- extract_batch(c(31, 53, 21022))
aud <- audit_job(aud, job_id, "phenotype_extraction")
} # }